I've only climbed on one once, didn't have twisting problems. But that may be because I had enough rope in play that my 150' rope was able to untwist as I descended. Generally it's a good idea to keep the tail of your rope free to allow it to release twist as a hitch or device generates it. Of course you can't always do that. It also maybe that your rope had some twist already in it and the Unicender amplified it. How do you store your rope? If you coil it then you're keeping or adding twist ito the line. If you flake it into a bag you can reduce twist every time you handle the rope. I use simple/cheap stuff sacks for my rope bags.
-AJ